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GitHub - qupath/qupath.github.io: GitHub pages site
April 2022: QuPath Webinar & Hackathon. Please join us for a new QuPath webinar on 25 April 2022!. The webinar will run twice with live Q&A - register below for the time that suits you best:. QuPath: Past, Present & Future - 09:00 BST (08:00 UTC / 10:00 CET); QuPath: Past, …
Github.comDA: 10 PA: 24 MOZ Rank: 34
Overview (QuPath 0.3.0)
QuPath image viewing and display. qupath.lib.gui.viewer.overlays. Support for overlays, which may be painted on top of QuPathViewers. qupath.lib.gui.viewer.recording. Record and display …
Qupath.github.ioDA: 16 PA: 14 MOZ Rank: 31
qupath.github.io/README.md at main · qupath/qupath.github.io
Qupath.github.io / README.md Go to file Go to file T; Go to line L; Copy path Copy permalink . Cannot retrieve contributors at this time. September 2021: New QuPath API docs September …
Github.comDA: 10 PA: 44 MOZ Rank: 56
Commits · qupath/qupath.github.io · GitHub
GitHub pages site. Contribute to qupath/qupath.github.io development by creating an account on GitHub.
Github.comDA: 10 PA: 37 MOZ Rank: 50
All Classes (QuPath 0.3.0) - qupath.github.io
QuPath command to display key-presses and mouse movement logged when interacting with the main Window. IntensityFeaturesPlugin Plugin for calculating intensity-based features, …
Qupath.github.ioDA: 16 PA: 35 MOZ Rank: 55
Installation — QuPath 0.3.0 documentation
Download QuPath for your platform (Windows, Linux, macOS) from GitHub and install ‘as normal’: On Windows, if you downloaded an .msi file then double-click on it to launch the …
Qupath.readthedocs.ioDA: 21 PA: 39 MOZ Rank: 65
QuPath v0.2.0-m5 available | Pete’s blog - petebankhead.github.io
Fifth milestone on the path to QuPath v0.2.0. Pete's blog. About Disclaimer Scripting Thoughts. QuPath v0.2.0-m5 available. Fifth milestone on the path to QuPath …
Petebankhead.github.ioDA: 22 PA: 39 MOZ Rank: 67
QuPath v0.2.0-m4 now available | Pete’s blog
QuPath v0.2.0-m4 is now online!. As usual, many changes while moving towards the next release. Here’s an overview of the main ones. Please report bugs on GitHub - and for …
Petebankhead.github.ioDA: 22 PA: 40 MOZ Rank: 69
Using ABBA’s registration in QuPath | Aligning Big Brains & Atlases
Importing ABBA registration results in QuPath. In QuPath, provided you have correctly installed the required extensions, you can click Extensions > ABBA > Load Atlas Annotations into Open …
Biop.github.ioDA: 14 PA: 38 MOZ Rank: 60
Building from source — QuPath 0.3.0 documentation
Just download an existing installer from qupath.github.io and use that instead. Command line ¶ If you’re moderately comfortable working from a command line, there’s not much required to …
Qupath.readthedocs.ioDA: 21 PA: 39 MOZ Rank: 69
QuPath: The global impact of an open source digital pathology …
1. Introduction. The use of open source software is becoming a key component of modern scientific activity. Indeed, there is increased evidence that some of the key discoveries in many …
Ncbi.nlm.nih.govDA: 20 PA: 25 MOZ Rank: 55
Script of the Day: Whole slide image processing with ImageJ
Send all or part of the whole slide image to ImageJ, specifying the resolution in a scanner and magnification-independent way. Apply color deconvolution in ImageJ, using the …
Petebankhead.github.ioDA: 22 PA: 50 MOZ Rank: 90
!Manipulating objects in QuPath · GitHub
Hi Svidro, I'm new to qupath and trying to use your splitting annotations into contiguous areas scripts. When I create a single annotation in the middle of the slide with the …
Gist.github.comDA: 15 PA: 40 MOZ Rank: 67
Changing the hierarchy | Pete’s blog - GitHub Pages
QuPath’s object hierarchy has been an important part of the software since the start. It’s where all the annotations, cells and other objects reside - arranged in a hierarchical …
Petebankhead.github.ioDA: 22 PA: 46 MOZ Rank: 81
Creating annotations around the tumor | Pete’s blog
Based on the feedback and whether it seems to help, it might graduate to becoming a built-in QuPath command in the future. Step-by-step guide. Find and open a suitable image. …
Petebankhead.github.ioDA: 22 PA: 45 MOZ Rank: 81
Telegram Messenger Easy, fast alerts - jeff-haas.github.io
Set up an account with Telegram Messenger, and install Python on your computer. Add a small script to the end of your QuPath script, which calls a small Python script. The Python script …
Jeff-haas.github.ioDA: 19 PA: 33 MOZ Rank: 67
PathUtils (qupath-extension-biop 1.0.3 API) - biop.github.io
Parameters: pathObject - the PathObject to dilate or erode radiusPixels - the radius of erosion/dilation removeInterior - whether to create an annotation from the difference of the two …
Biop.github.ioDA: 14 PA: 50 MOZ Rank: 89
API Help (qupath-extension-cellpose 0.3.1 API) - GitHub Pages
Overview. The Overview page is the front page of this API document and provides a list of all packages with a summary for each. This page can also contain an overall description of the …
Biop.github.ioDA: 14 PA: 40 MOZ Rank: 71
CellposeBuilder (qupath-extension-cellpose 0.3.1 API)
CellposeBuilder. cellExpansion (double distance) Amount by which to expand detected nuclei to approximate the cell area. CellposeBuilder. cellposeChannels (int channel1, int channel2) Sets …
Biop.github.ioDA: 14 PA: 50 MOZ Rank: 32
Import Atlas regions in QuPath from an ABBA registered project …
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden …
Gist.github.comDA: 15 PA: 43 MOZ Rank: 77
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