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N/ALDL TECHNOLOGY: Smart, safe and green systems
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Email address with ldlink.nci.nih.gov
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ldlink.nci.nih.gov
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Ldlink.nci.nih.govDA: 18 PA: 18 MOZ Rank: 19
Using genetic variants to evaluate the causal effect of …
Proxy SNPs (R 2 > 0.9) from LDlink (https://ldlink.nci.nih.gov/) were used when the SNPs were not available for the outcome . The palindromic SNPs with intermediate allele frequencies (palindromic SNPs referred to the SNPs with A/T or G/C alleles and “intermediate allele frequencies” referred to 0.01 < allele frequency < 0.30) were excluded from the above …
Ncbi.nlm.nih.govDA: 20 PA: 25 MOZ Rank: 46
连锁不平衡小工具-----LDlink的使用教程 - 知乎
无论是在进行全基因组关联研究（GWAS）还是孟德尔随机化研究（MR）中，我们都需要考虑SNP间的连锁不平衡（LD）信息，这里小陈给大家简单介绍一下用于LD分析的工具-----LDlink（ https:// ldlink.nci.nih.gov/? tab=home ），使用这个网站时最好使用代理服务器，这样比较稳定，当然不使用代理的话，有时候 ...
Zhuanlan.zhihu.comDA: 18 PA: 12 MOZ Rank: 32
LDlinkR package - RDocumentation
LDlinkR is an R package developed to query and download results (internet access required) generated by LDlink web-based applications from the R console. It facilitates researchers who are interested in performing batch queries. LDlinkR accelerates genomic research by providing efficient and user-friendly functions to programmatically ...
Rdocumentation.orgDA: 22 PA: 32 MOZ Rank: 57
LDpop: an interactive online tool to calculate and visualize …
The geographic mapping of each SNP's allele frequencies by population as well as visualization of LD statistics allows the user to easily trace geographic allelic correlation patterns and examine population-specific differences. Conclusions: LDpop is a free and publicly available cross-platform web tool which can be accessed online at https ...
Pubmed.ncbi.nlm.nih.govDA: 23 PA: 10 MOZ Rank: 37
Interleukin-18 and COVID-19 - PubMed Central (PMC)
We sought correlated proxies (r 2 > 0.8) from ldlink (https://ldlink.nci.nih.gov/) for any genetic predictors not available in the most recent GWAS of COVID-19. We used number of children as a positive control outcome for interleukin-18, because given the selective pressure on vulnerability to infections [2, 3], protective immune function differences would be expected to …
Ncbi.nlm.nih.govDA: 20 PA: 25 MOZ Rank: 50
CRAN - Package LDlinkR
Provides access to the 'LDlink' API (< https://ldlink.nci.nih.gov/?tab=apiaccess >) using the R console. This programmatic access facilitates researchers who are ...
Cran.r-project.orgDA: 18 PA: 32 MOZ Rank: 56
LDlinkR: Calculating Linkage Disequilibrium (LD) in Human …
https://ldlink.nci.nih.gov Package repository: View on CRAN: Installation: Install the latest version of this package by entering the following in R: install.packages("LDlinkR") Try the LDlinkR package in your browser Run. Any scripts or data that you put into this service are public. ...
Rdrr.ioDA: 7 PA: 14 MOZ Rank: 28
Low Intelligence Predicts Higher Risks of Coronary Artery Disease …
The pairwise-linkage disequilibrium of SNPs was tested using LD-Link (https://ldlink.nci.nih.gov/) based on the European 1,000 Genomes Project reference panel (r2< .001 and clump distance >10,000 kb). If SNPs were in linkage disequilibrium, the SNP with a greater p-value would be removed (Machiela and Chanock, 2015; Myers et al., 2020).
Ncbi.nlm.nih.govDA: 20 PA: 25 MOZ Rank: 53
An automated framework for efficiently designing deep ... - Nature
Variants in high LD with the allele-specific variant of interest were queried from LDlink webserver 43 (https://ldlink.nci.nih.gov/) using the EUR/CEU population and R 2 > 0.9. Then the set of ...
Nature.comDA: 14 PA: 28 MOZ Rank: 51
Misaligned sequencing reads from the GNAQ-pseudogene locus …
LDlink (version: March 2020) (public web tool: https://ldlink.nci.nih.gov/) was used to interrogate the prevalence of co-occurring polymorphisms that caused sequencing reads to …
Nature.comDA: 14 PA: 28 MOZ Rank: 52
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