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XNAT Tools: XNAT Tools Home

XNAT Populate is a project which uploads image session data to an XNAT instance based on configuration YAML files. This utility comes with a wide variety of predefined datasets containing multiple modalities, multiple data formats, and other conditions that make it possible to test a wide variety of image handling scenarios.

Wiki.xnat.org

DA: 13 PA: 11 MOZ Rank: 24

XNAT Documentation: XNAT Installation Guide

Step 3: Set Up XNAT_HOME and the File System Structure. XNAT 1.8.0 was developed and tested on Apache Tomcat 7.0, which just reached its announced end of life on March 31, 2021. These instructions reflect that environment. It is easy to modify an existing XNAT installation for compatibility with Tomcat 8.5.

Wiki.xnat.org

DA: 13 PA: 50 MOZ Rank: 78

Release Notes - XNAT Documentation: Home

The XNAT ML release is a stand-alone package that combines XNAT 1.8 with several platform and plugin additions to enable a baseline of Machine Learning capability. These capabilities were first demonstrated in collaboration with the NVIDIA Clara suite of medical imaging AI tools, at RSNA 2019. Since then, we have been expanding functionality, deepening integrations, and …

Wiki.xnat.org

DA: 13 PA: 3 MOZ Rank: 18

XNAT - About

XNAT is an open source imaging informatics platform developed by the Neuroinformatics Research Group at Washington University. XNAT was originally developed at Washington University in the Buckner Lab, which is now located …

Xnat.org

DA: 8 PA: 7 MOZ Rank: 18

oriadev / qunex / wiki / XNAT / XNAT container launch - Bitbucket

Once the pipeline completes, the following resources are generated within the XNAT system at the MRSession level: hcp: This folder contains all the files generated by the QuNex Pipeline. INFO: This folder contains the parameter files which were used and were generated by the QuNex code. It also contains the relevant log files in runlogs and comlogs subfolders. QC: …

Bitbucket.org

DA: 13 PA: 49 MOZ Rank: 66

XNAT - Data Coordinating Center (DCC) - Wiki - Utah DCC

More details can be found on the XNAT developers wiki page. To upload a Zip file to XNAT, you can POST the file to the /data/services/import REST endpoint, with the upload file specified using the image_archive query variable and multi-part form data encoding. The basic form of this command using curl would be:

Wiki.utahdcc.org

DA: 16 PA: 50 MOZ Rank: 73

Container Service Plugin - XNAT MarketplaceXNAT Marketplace

The XNAT Container Service plugin allows XNAT to control containers (primarily Docker containers). Containers are a lightweight and flexible way of running processes on XNAT data, similar to pipelines in their usage. Once configured by an XNAT administrator, XNAT users can launch containers on their project data and see results nearly instantaneously. To use it, you …

Marketplace.xnat.org

DA: 20 PA: 34 MOZ Rank: 60

XNAT wiki temporarily offline - groups.google.com

If you're wondering why you can't get to the XNAT wiki, this tweet explains it: ... Wiki service has been restored! Thanks to Mike and Moisés for pushing a fix up quickly. All documentation, news items, and workshop content are now available again. Regards, Will Reply all Reply to author Forward 0 new messages Search. Clear search. Close search. Google …

Groups.google.com

DA: 17 PA: 32 MOZ Rank: 56

XNAT · GitLab

Projects around XNAT, the open-source imaging informatics software platform (https://www.xnat.org/).

Gitlab.com

DA: 10 PA: 27 MOZ Rank: 45

How-To Articles - XNAT - Data Coordinating Center (DCC) - Wiki

How to Find XNAT CSTORE Parameters; Upload an Imaging Session Using DicomBrowser; Upload an Imaging Session Using the Web Applet; Upload DICOM Zip Through the Web; Upload DICOM ZIP using REST; 4 more …

Wiki.utahdcc.org

DA: 16 PA: 40 MOZ Rank: 65

xnat [Computing] - University of Pennsylvania

The XNAT data archive is stored on the /data/tesla-data volume, and is directly accessible with read-only permissions on the cluster at /data/XNAT.This allows direct processing from the cluster of data stored within XNAT. Users who need to read this data must be added to the xnat_users linux group. Individual project directories are readable only by members of the linux group for …

Cfn.upenn.edu

DA: 13 PA: 24 MOZ Rank: 47

GitHub - NrgXnat/xnat-desktop-client

Although it ends up being fairly pointless (turns out it always tries to use an external JDK, esp the one installed on the build machine; long story).

Github.com

DA: 10 PA: 28 MOZ Rank: 49

XNAT - NITRC

XNAT currently contains 17 projects, 11559 subjects, and 13282 imaging sessions. Projects.

Nitrc.org

DA: 13 PA: 4 MOZ Rank: 29

GitHub - szullino/XNAT-PIC: XNAT-PIC consist of MRI2DICOM, a …

Users can then click on MRI2DICOM to convert the ParaVision® (Bruker, Inc. Billerica, MA) raw data to DICOM standard or on the XNAT-PIC Uploader to import the MR image sessions to XNAT, if your images are already in DICOM. In the first case, the converter needs to know the directory of the project in ParaVision® format. Once the process is over, a new folder with the …

Github.com

DA: 10 PA: 18 MOZ Rank: 41

GitHub - XNAT-Dashboards/XNAT-Dashboards: This is a mirrored …

XNAT Dashboards is a responsive dashboard framework for extensive exploration, monitoring, and reviewing large neurological imaging datasets present on the XNAT server instance. It fetches data from any XNAT instance servers and generates highly-visualized, summarized representations of complex scientific data present on the servers and facilitate user navigation …

Github.com

DA: 10 PA: 32 MOZ Rank: 56

BIDS in XNAT | Open WIN

The XNAT Wiki page explaining the process has been removed, but a reply in a topic on the discussion group explains the process here. Use: When on a session page (where the list of scans is shown) you will now see a “Run Containers” option on the Actions panel, clicking on the “Run dcm2niix-session on a Session” option will launch a window where you can launch the …

Open.win.ox.ac.uk

DA: 17 PA: 50 MOZ Rank: 96

XNAT-DICOM Gateway Plugin - Google Groups

You received this message because you are subscribed to the Google Groups "xnat_discussion" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected].

Groups.google.com

DA: 17 PA: 32 MOZ Rank: 65

GitHub - somnonetz/xnat-fhir-plugin: Extending XNAT with FHIR …

XNAT FHIR Plugin. This plugin provides an additional REST API for XNAT 1.7, implementing the HL7 FHIR protocol.. Installation. Please follow the instructions in the official XNAT documentation.. Authors. Maryna Khvastova, Michael Witt, Sabina Mollenhauer, Tabea Herrmann, Isabella Kaupp Rivadeneira

Github.com

DA: 10 PA: 27 MOZ Rank: 54

XNAT - NITRC

ID: adhd_200 Description: The ADHD-200 sample from the 1000 Functional Connectomes project.

Nitrc.org

DA: 13 PA: 50 MOZ Rank: 32

Molecular Imaging Center - University of Torino - CIM-XNAT

XNAT natively supports multiple imaging modalities, such as MR, PET, CT, and US. We are extending XNAT datatypes to other preclinical imaging modalities, such as Optoacoustic (OA) and Optical Imaging (OI). We have overcome these limitations through the integration of an open-source archiving platform commonly exploited at clinical level based on XNAT with …

Cim.unito.it

DA: 16 PA: 35 MOZ Rank: 70

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