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PyMOL Wiki
PyMOL v2.5 has been released on May 10, 2021. Python 3. New Python 3 compatibility guide for scripts and plugins. POSF. New PyMOL fellows announced for 2018-2019. Tutorial. Plugins Tutorial updated for PyQt5. New Plugin. PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe.
Wiki.pymol.orgDA: 14 PA: 20 MOZ Rank: 34
Practical Pymol for Beginners - PyMOL Wiki
The PyMOL command line is a great tool that lets the experienced user change all sorts of options that simply don't appear in the point-and-click graphical interface. It can also be a lot faster. Combined with scripting, it is a powerful option for automating tasks and making intricate sets of changes.
Wiki.pymol.orgDA: 14 PA: 40 MOZ Rank: 55
Python - PyMOL Wiki
Python Version. Python scripts and commands used within PyMOL can only be written using the current version of Python that is supported by your version of PyMOL. To determine which version of Python you can use, type the following command into PyMOL: print(sys.version) Note that this version of Python is not necessarily related to the version ...
Wiki.pymol.orgDA: 14 PA: 17 MOZ Rank: 33
Windows Install - PyMOL Wiki
From PyMOL Wiki. Jump to navigation Jump to search. This page describes how to install PyMOL on Microsoft Windows. Contents. 1 Incentive PyMOL; 2 Open-Source PyMOL. 2.1 Extend PyMOL with additional scripts; 3 See Also; Incentive PyMOL. Schrödinger provides an installer to paying sponsors (EXE for PyMOL 2.0, MSI for previous version). The bundle also …
Wiki.pymol.orgDA: 14 PA: 26 MOZ Rank: 43
Windows Install - PyMOLWiki
First install "numpy" as an available module to Python. Select appropriate installer from here. Download the script/plugin collection Pymol-script-repo from a .zip file from here. Unpack it to here: C:\Python27\Lib\site-packages\pymol\pymol_path\Pymol-script-repo Double check that the folder name is correct and the same.
Pymolwiki.orgDA: 13 PA: 26 MOZ Rank: 43
Selection Algebra - PyMOL Wiki
Language Properties. names and keywords are case-insensitive unless ignore_case is set; names and keywords can be abbreviated to non-ambiguous prefixes; Best practice recommendation: Only write case-sensitive, non-abbreviated selection expressions. That way your scripts will be robust against run-time configuration and future changes to the language …
Wiki.pymol.orgDA: 14 PA: 28 MOZ Rank: 47
Align - PyMOLWiki
align performs a sequence alignment followed by a structural superposition, and then carries out zero or more cycles of refinement in order to reject structural outliers found during the fit.align does a good job on proteins with decent sequence similarity (identity >30%).For comparing proteins with lower sequence identity, the super and cealign commands perform …
Pymolwiki.orgDA: 13 PA: 16 MOZ Rank: 35
PyMOL | pymol.org
PyMOL is a commercial product, but we make most of its source code freely available under a permissive license. The open source project is maintained by Schrödinger and ultimately funded by everyone who purchases a PyMOL license. Open source enables open science. ...
Pymol.orgDA: 13 PA: 13 MOZ Rank: 21
PyMOL - Wikipedia
Pymol .org /2 /. PyMOL is an open source but proprietary [3] molecular visualization system created by Warren Lyford DeLano. It was commercialized initially by DeLano Scientific LLC, which was a private software company dedicated to creating useful tools that become universally accessible to scientific and educational communities.
En.wikipedia.orgDA: 16 PA: 11 MOZ Rank: 35
Linux Install - PyMOLWiki
PyMOL is an open source but proprietary molecular visualization system created by Warren Lyford DeLano. It was commercialized initially by DeLano Scientific LLC, which was a private software company dedicated to creating useful tools that become universally accessible to scientific and educational communities. It is currently commercialized by Schrödinger, Inc. As the original software license
Pymolwiki.orgDA: 13 PA: 24 MOZ Rank: 46
Category:Tutorials - PyMOLWiki
Category:Tutorials. From PyMOLWiki. Jump to: navigation. , search. The pages here were all designed to help people quickly learn some basic aspect of PyMOL. There is a great amount of information on the wiki, but sometimes it's …
Pymolwiki.orgDA: 13 PA: 29 MOZ Rank: 52
Category:Commands - PyMOLWiki
This is a list of all commands for PyMol's interface and cmd module. Please Read Before Adding! For the sake of organization, please read Organizing PyMol Commands. These all need to be reorganized based on the convention. Subcategories. This category has the following 20 subcategories, out of 20 total. A. Atoms Module ; C. Color Module; Colour Module; D. …
Pymolwiki.orgDA: 13 PA: 28 MOZ Rank: 52
Plugins | www.pymol.org
Plugins. PyMOL Plugins are user-developed modules that extend PyMOL's capabilities via the Tcl/Tk user interface. In order to use them, you'll need an Tcl/Tk-based version of PyMOL (on Macs, this means either using Fink or the X11/Hybrid version: copy and rename MacPyMOL. to PyMOLX11Hybrid). PyNMR (Leigh Willard and Stephane Gagne) Features ...
Pymol.orgDA: 9 PA: 13 MOZ Rank: 34
PyMOL Command Reference
This is the list of all PyMOL commands which can be used in the PyMOL command line and in PML scripts. The command descriptions found in this file can also be printed to the PyMOL text buffer with the help command. Example: PyMOL>help color ... The list of arguments for a command (the "usage") can be queried on the command line with a ...
Pymol.orgDA: 9 PA: 23 MOZ Rank: 45
PyMOL - Simple English Wikipedia, the free encyclopedia
PyMOL. A PyMOL instance, with the Viewer and GUI visible. PyMOL is an open source program for the viewing and manipulation of data from proteins and other biological molecules. PyMOL is written in the Python programming language .
Simple.wikipedia.orgDA: 20 PA: 11 MOZ Rank: 45
PyMOL | Bioinformatics Wikia | Fandom
PyMOL is a "Python-enhanced molecular graphics tool" which "excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories". PyMOL | …
Bio.fandom.comDA: 14 PA: 11 MOZ Rank: 40
PyMOL — Wikipédia
PyMOL est un logiciel libre de visualisation de structures chimiques en 3D créé par Warren DeLano. Il est principalement utilisé par les étudiants, les professeurs et les chercheurs en chimie et en biologie structurale. Il est développé en Python et est multiplateformes. Ainsi, il fonctionne sous Windows, Mac OS X, Linux et les systèmes Unix. Ce logiciel est régulièrement utilisé ...
Fr.wikipedia.orgDA: 16 PA: 11 MOZ Rank: 43
PyMOL - Wikipedia
PyMOL è un software libero di grafica 3D utilizzato per la rappresentazione di biomolecole in biochimica e bioinformatica. Oltre all'uso più importante nella biologia strutturale, formati di dati comuni consentono a PyMOL di girare su sistemi operativi diversi, con un rendering della grafica di alta qualità. La parte iniziale del nome, Py, si riferisce al linguaggio di programmazione …
It.wikipedia.orgDA: 16 PA: 11 MOZ Rank: 44
PyMOL
PyMOL là một hệ thống trực quan hóa phân tử mã nguồn mở được tạo ra bởi Warren Lyford DeLano . Ban đầu nó được thương mại hóa bởi DeLano Scientific LLC, một công ty phần mềm tư nhân chuyên tạo ra các công cụ hữu ích có thể truy cập rộng rãi cho các cộng đồng khoa học và giáo dục. Nó hiện đang được thương ...
Wivi.wikiDA: 9 PA: 11 MOZ Rank: 38
Wikipedia:WikiProject Molecular Biology/PyMol tutorial
The WikiProject: Molecular and Cellular Biology supports the use of PyMOL, an open-source molecular visualization program, for the creation of images of biomolecules such as proteins, DNA, and related complexes. This page provides introduces the software and demonstrates how to create high-quality images of proteins.
En.wikipedia.orgDA: 16 PA: 50 MOZ Rank: 95
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