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Domain Informations
Network
- inetnum : 128.18.0.0 - 128.18.255.255
- name : SRINET
- handle : NET-128-18-0-0-1
- status : Direct Allocation
- created : 2023-10-30
- changed : 2023-10-30
Owner
- organization : SRI International
- handle : SRIINT-Z
- address : Array,Menlo Park,CA,94025,US
Technical support
- handle : LS732-ARIN
- name : Serrano, Louis
- phone : +1-650-859-5687
- email : [email protected]
Abuse
- handle : HWB1-ARIN
- name : Barker, Harold William
- phone : +1-650-859-2622
- email : [email protected],[email protected]
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Host Informations
| Host name | metacyc.org |
| IP address | 128.18.244.60 |
| Location | Menlo Park United States |
| Latitude | 37.4446 |
| Longitude | -122.1835 |
| Metro Code | 807 |
| Timezone | America/Los_Angeles |
| Postal | 94025 |
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We found Websites Listing below when search with vibrio.biocyc.org on Search Engine
Summary of Vibrio hepatarius, version 25.5 - biocyc.org
Summary of Vibrio hepatarius, version 25.5 Tier 3 Uncurated Database Authors: Pallavi Subhraveti 1, Ingrid Keseler 1, Anamika Kothari 1, Ron Caspi 1, Peter D Karp 1 1 SRI International . Summary: This Pathway/Genome Database (PGDB) was generated on 15-Oct-2019 from the annotated genome of Vibrio hepatarius, as obtained from RefSeq (annotation …
Biocyc.orgDA: 10 PA: 17 MOZ Rank: 27
Sign Up - BioCyc
Free Account. Sign up for a BioCyc account, and receive the following benefits: Unlimited access to EcoCyc ( Escherichia coli K-12) and MetaCyc (metabolic encyclopedia for all domains of life) A limited number of free monthly page views for other organisms. Create and store SmartTables of genes, metabolites, etc.
Biocyc.orgDA: 10 PA: 18 MOZ Rank: 29
Summary of Vibrio genomosp. F10 ZF-129, version 26.0
Summary of Vibrio genomosp.F10, Strain ZF-129, version 26.0 Tier 3 Uncurated Database Authors: Pallavi Subhraveti 1, Ingrid Keseler 1, Anamika Kothari 1, Ron Caspi 1, Peter D Karp 1 1 SRI International . Summary: This Pathway/Genome Database (PGDB) was generated on 15-Feb-2020 from the annotated genome of Vibrio genomosp.F10 ZF-129, as obtained from …
Biocyc.orgDA: 10 PA: 17 MOZ Rank: 29
MetaCyc Vibrio parahaemolyticus - biocyc.org
Taxonomic lineage: cellular organisms, Bacteria <bacteria>, Proteobacteria, Gammaproteobacteria, Vibrionales, Vibrionaceae, Vibrio, Vibrio harveyi group Direct sub-taxa of Vibrio parahaemolyticus: Vibrio parahaemolyticus KN1699
Biocyc.orgDA: 10 PA: 15 MOZ Rank: 28
MetaCyc chitin degradation II (Vibrio) - BioCyc database collection
Overall, chitin utilization is a highly complex process that has been divided into several stages (sensing, attachment, extracellular degradation, uptake and catabolism) and involves many genes [ Li04, Meibom04 ]. The overall pathway spans the extracellular space, periplasm, and cytosol. This pathway shows reactions that can occur in the ...
Biocyc.orgDA: 10 PA: 15 MOZ Rank: 29
Phoenix Bioinformatics
The BioCyc web portal from SRI International contains genome and metabolic-pathway information for 17,832 databases including 60 curated databases. BioCyc encyclopedias are unique in integrating a diverse range of data and providing a high level of curation for important microbes. BioCyc Pathway/Genome Databases (PGDBs) are organized into tiers ...
Phoenixbioinformatics.orgDA: 29 PA: 7 MOZ Rank: 41
Saccharomyces cerevisiae Genome Database - BioCyc
YeastCyc is a Pathway/Genome Database of the model eukaryote Saccharomyces cerevisiae S288c. In addition to genomic information, the database contains metabolic pathway, reaction, enzyme, and compound information, which has been manually curated from the scientific literature. The curation process includes periodic updates to the metabolites ...
Yeast.biocyc.orgDA: 16 PA: 16 MOZ Rank: 23
Summary of Vibrio cholerae O1 biovar El Tor str. N16961, version …
Summary: The primary data source for this dataset was the full genome sequence of Vibrio cholerae O1 O1 biovar El Tor str. N16961 derived from Genbank entries AE003852 and AE003853. The PGDB was created from the annotated genome using the PathoLogic component of the Pathway Tools software [ Karp11, Karp19] and the MetaCyc reference database ...
Biocyc.orgDA: 10 PA: 17 MOZ Rank: 34
MetaCyc Vibrio cholerae - biocyc.org
Synonyms: Vibrio comma, Vibrio cholera, Vibrio cholerae bv. albensis, Vibrio cholerae biovar albensis, Vibrio cholerae-asiaticae, Vibrio albensis, Spirillum cholerae, Spirillum cholerae-asiaticae, Pacinia cholerae-asiaticae, Microspira comma, Liquidivibrio cholerae, Kommabacillus, Bacillus cholerae, Bacillus cholerae-asiaticae, Bacillo virgola del Koch
Biocyc.orgDA: 10 PA: 15 MOZ Rank: 33
Escherichia coli K-12 substr. MG1655 - websvc.biocyc.org
Synonyms: ferro-protoporphyrin chelatase, iron chelatase (ambiguous), heme synthetase (ambiguous), heme synthase (ambiguous), protoheme ferro-lyase, ferrochelatase (ambiguous)
Websvc.biocyc.orgDA: 17 PA: 16 MOZ Rank: 42
EcoCyc: Encyclopedia of E. coli Genes and Metabolism
EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways. EcoCyc is part of the larger BioCyc collection of thousands of Pathway/Genome Databases for sequenced genomes.
Ecocyc.orgDA: 14 PA: 14 MOZ Rank: 25
Summary of Salmonella enterica enterica serovar Typhimurium str.
Authors: Carol A Fulcher 1, Pallavi Subhraveti 1, Anamika Kothari 1, Ingrid Keseler 1, Ron Caspi 1, Peter D Karp 1. 1 SRI International. Summary: This Pathway/Genome Database (PGDB) was generated on 17-Aug-2018 from the annotated genome of Salmonella enterica enterica serovar Typhimurium str. 14028S, as obtained from RefSeq (annotation date: 26 ...
Salmonella.biocyc.orgDA: 21 PA: 28 MOZ Rank: 60
Taxonomy browser (Vibrio natriegens)
Vibrio natriegens: meta-databases: BacDive: 3 records from this provider: organism-specific: BioCyc: Vibrio natriegens (Payne et al. 1961) Baumann et al. 1981: taxonomy/phylogenetic: Encyclopedia of life: 2 records from this provider: organism-specific: Genomes On Line Database: Show Biotic Interactions: taxonomy/phylogenetic: Global Biotic ...
Ncbi.nlm.nih.govDA: 20 PA: 28 MOZ Rank: 60
Taxonomy browser (Vibrio neocaledonicus)
BioCyc: 2875330874: Vibrio neocaledonicus CGJ02-2: organism-specific: Integrated Microbial Genomes: Vibrio neocaledonicus: taxonomy/phylogenetic: Lifemap: Notes: Groups interested in participating in the LinkOut program should visit the LinkOut home page. A list of our current non-bibliographic LinkOut providers can be found here. Information from sequence entries Show …
Ncbi.nlm.nih.govDA: 20 PA: 28 MOZ Rank: 61
BioCyc Genome Database Collection | Wolters Kluwer
BioCyc key features. Over 20,000 organism-centric databases covering all domains of life; those of many models and highly studied organisms have been curated with data from over 130,000 publications. Each database contains the annotated genome of the organism, its metabolic pathways, plus other information including, for some, regulatory networks.
Wolterskluwer.comDA: 21 PA: 50 MOZ Rank: 36
License Pathway Tools/BioCyc Bundle and BioCyc Data Files
Tier 1 (2 PGDBs, EcoCyc and MetaCyc): 6GB RAM. Tiers 1+2 (up to 50 PGDBs): 8GB RAM. Tiers 1+2+3 (3+GHz 4-core CPU required): 128GB RAM. NOTE: For Tier1+2+3, please adjust two user/system parameters (see your OS docs for exact parameter names): max open files should be bumped up to at least 8k for the userid running the web server.
Metacyc.orgDA: 11 PA: 22 MOZ Rank: 48
Taxonomy browser (Vibrio cyclitrophicus)
Vibrio cyclitrophicus: meta-databases: BacDive: Vibrio cyclitrophicus ECSMB14105: organism-specific: BioCyc: Vibrio cyclitrophicus corrig. Hedlund and Staley, 2001: taxonomy/phylogenetic: Encyclopedia of life: GOLD Multi-Isolate Organism: Go0451788: organism-specific: Genomes On Line Database: Show Biotic Interactions: taxonomy/phylogenetic ...
Ncbi.nlm.nih.govDA: 20 PA: 28 MOZ Rank: 64
BioCyc and Pathway Tools Publications - MetaCyc
Publications on the Pathway Tools Ontology. [PTools04b] P.D.Karp., S. Paley., C.J. Krieger., and Zhang P. An Evidence Ontology for use in Pathway/Genome Databases. Pacific Symposium on Biocomputing 9:190-201 (2004) [PTools00] P.D.Karp. An ontology for biological function based on molecular interactions.
Metacyc.orgDA: 11 PA: 19 MOZ Rank: 47
MetaCyc Publications
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases Nucleic Acids Research 42(1):D459-D471. Additional Publications [MetaCyc13] T, Altman., M, Travers., A, Kothari., R. Caspi., and P.D. Karp. A systematic comparison of the MetaCyc and KEGG pathway databases.
Metacyc.orgDA: 11 PA: 26 MOZ Rank: 55
Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 Taxonomy ID: 1219067 (for references in articles please use NCBI:txid1219067) current name. Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759. NCBI BLAST name: g-proteobacteria Rank: strain Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid) Other names: heterotypic …
Ncbi.nlm.nih.govDA: 20 PA: 28 MOZ Rank: 67
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