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subread free download - SourceForge
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction.
Sourceforge.netDA: 15 PA: 11 MOZ Rank: 26
Subread - Browse /subread-2.0.3 at SourceForge.net
Get notifications on updates for this project. Get the SourceForge newsletter. Get newsletters and notices that include site news, special offers and exclusive discounts about IT …
Sourceforge.netDA: 15 PA: 38 MOZ Rank: 54
Subread - Browse /subread-2.0.1 at SourceForge.net
The coronavirus dataset. SAM tools. SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to …
Sourceforge.netDA: 15 PA: 38 MOZ Rank: 55
subread-software [ILRI Research Computing]
See versions of subread which are available: $ module avail subread. Load one version into your environment and run it: $ module load subread/1.6.2 $ subread-buildindex $ featureCounts
Hpc.ilri.cgiar.orgDA: 18 PA: 17 MOZ Rank: 38
The Subread aligner: fast, accurate and scalable read mapping by …
Subread is the only aligner that allows the tuning of amount of memory used for read mapping. Subread was found to have a mapping speed 4–39 times as fast as other aligners when using 7.6 GB of memory, and 2–21 times as fast when using 4.3 GB of memory (Table 4). Subread achieves this enormous speed advantage mainly due to its efficient ...
Ncbi.nlm.nih.govDA: 20 PA: 25 MOZ Rank: 49
Subread | A mirror of https://sourceforge.net/projects/subread/
Implement Subread with how-to, Q&A, fixes, code snippets. kandi ratings - Low support, No Bugs, No Vulnerabilities. Strong Copyleft License, Build not available.
Kandi.openweaver.comDA: 20 PA: 20 MOZ Rank: 45
subread的下载和使用 - 简书
双十一刚过，你是否屯了很多的书？你又买了多少本时间管理类的书籍？买了、看了那么多的关于时间管理的书籍，你把握住 ...
Jianshu.comDA: 15 PA: 15 MOZ Rank: 36
Subread :: Anaconda.org
Conda install linux-64 v2.0.1; osx-64 v2.0.1; To install this package with conda run one of the following: conda install -c bioconda subread conda install -c bioconda/label/cf201901 subread
Anaconda.orgDA: 12 PA: 17 MOZ Rank: 36
linux学习100篇40：转录组分析用软件及安装featureCounts - 简书
1、在高通量测序分析中用于下游分析的关键信息是比对到每个genomic feature（外显子、基因等）中的read数目，而计数的过程称为read summarization. 2、featurecounts是一款使用于RNA-seq和DNA-seq的read summarization工具，应用了高效率的染色体哈希算法和feature区块技术. 3、它比 ...
Jianshu.comDA: 15 PA: 15 MOZ Rank: 38
Subread - Research Computing Documentation
From the Subread Home Page: Subread The Subread package comprises a suite of software programs for processing next-gen sequencing read data. Note that this package includes Subread, featureCount, and Subjunc. Separately, the same features are available as an R package, Rsubread. This can be installed via Bioconductor:
Wiki.rc.usf.eduDA: 15 PA: 18 MOZ Rank: 42
featureCounts 安装和使用|小空笔记
官网：http://subread.sourceforge.net/ Subreadpackage:high-performancereadalignment ...
Xknote.comDA: 10 PA: 17 MOZ Rank: 37
Download File List - Subread - OSDN
Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in the following paper: Yang Liao, Gordon K Smyth and Wei Shi. …
Osdn.netDA: 8 PA: 33 MOZ Rank: 52
nthreads option does NOT work in rsubread featureCounts
I increased nthethreads value in featureCounts but the running time didnt decrease. I used the following command: subread_res <- featureCounts (files, annot.ext = GTF_file, isGTFAnnotationFile = TRUE, nthreads = X, countMultiMappingReads = TRUE, fraction = TRUE) First run with 5 threads, 2.7 min used.
Support.bioconductor.orgDA: 24 PA: 9 MOZ Rank: 45
Subread on Biowulf - NIH HPC Systems
Create a swarmfile (e.g. subread.swarm). For example: cd dir1;subread-align -i indexfile -r inputfile -o outputfile cd dir2;subread-align -i indexfile -r inputfile -o outputfile cd dir3;subread-align -i indexfile -r inputfile -o outputfile cd dir4;subread-align -i indexfile -r inputfile -o outputfile Submit this job using the swarm command.
Hpc.nih.govDA: 11 PA: 18 MOZ Rank: 42
featureCounts进行转录本定量_qq_27390023的博客-CSDN博 …
三、subread工具完成序列比对和生物学定量 刚才我们用salmon工具完成了生物学定量，现在我们来看看另一款生物学定量工具，subread.subread是一个能快速进行序列比对和转录组定量的工具，我们使用它进行转录组定量一共需要三个步骤：1.建立索引 2.序列比对 3.使用featureCounts进行定量 。
Blog.csdn.netDA: 13 PA: 38 MOZ Rank: 65
Rsubread/Subread Users Guide - Riken
2.2 Download and installation 2.2.1 Install Bioconductor Rsubread package R software needs to be installed on my computer before you can install this package.
Bioconductor.riken.jpDA: 21 PA: 50 MOZ Rank: 35
Downloading File /subread-1.5.0-p3/subread-1.5.0-p3-source.tar …
Free download page for Project Subread's subread-1.5.0-p3-source.tar.gz.The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program....
Osdn.netDA: 8 PA: 50 MOZ Rank: 34
Downloading File /subread-2.0.3/subread-2.0.3-source.tar.gz
Free download page for Project Subread's subread-2.0.3-source.tar.gz.The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program....
Osdn.netDA: 8 PA: 50 MOZ Rank: 33
Subread インストールログ - cell-innovation.nig.ac.jp
参照： https://sourceforge.net/projects/subread/ http://subread.sourceforge.net/ インストールログ： $ cd /work_path $ wget https://sourceforge.net ...
Cell-innovation.nig.ac.jpDA: 25 PA: 34 MOZ Rank: 77
Subread/README.txt at master · GeekLogan/Subread · GitHub
A mirror of https://sourceforge.net/projects/subread/ - Subread/README.txt at master · GeekLogan/Subread
Github.comDA: 10 PA: 41 MOZ Rank: 70
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