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Installation — stLearn 0.4.11 documentation - Read the Docs

Step 1: Prepare conda environment for stLearn conda create -n stlearn python=3 .8 conda activate stlearn Step 2: Install stlearn using pip pip install -U stlearn Popular bugs ¶ …

Stlearn.readthedocs.io

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stlearn.Read10X — stLearn 0.4.11 documentation - Read the Docs

Based on the Space Ranger output docs. Parameters: path – Path to directory for visium datafiles. genome – Filter expression to genes within this genome. count_file – Which file …

Stlearn.readthedocs.io

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Interactive stLearn — stLearn 0.4.11 documentation

Docs » Tutorials » Interactive stLearn Edit on GitHub Interactive stLearn ¶ In this tutorial, we introduce several functions for interactive plotting to explore the progression of Ductal Carcinoma in situ (DCIS) - Invasive …

Stlearn.readthedocs.io

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stLearn | Read the Docs

Stay Updated. Blog; Sign up for our newsletter to get our latest blog updates delivered to your inbox weekly.

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stlearn.tl.clustering.louvain — stLearn 0.3.1 documentation

Random_state – Change the initialization of the optimization. restrict_to – Restrict the clustering to the categories within the key for sample annotation, tuple needs to contain …

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stlearn.add.annotation — stLearn 0.3.1 documentation - Read the …

Use_label – Choosing clustering type. copy – Return a copy instead of writing to adata. Returns Depending on copy, returns or updates adata with the following fields. ** …

Dev-st.readthedocs.io

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stlearn.ReadMERFISH — stLearn 0.3.1 documentation - Read the …

Stlearn.ReadMERFISH¶ stlearn.ReadMERFISH (count_matrix_file: Union [str, pathlib.Path], spatial_file: Union [str, pathlib.Path], library_id: str = None, scale: float = 1, …

Dev-st.readthedocs.io

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stlearn.pl.trajectory.local_plot — stLearn 0.3.1 documentation

Stlearn.pl.trajectory.local_plot. Local spatial trajectory inference plot. adata – Annotated data matrix. use_label – Use label result of clustering method. use_cluster – Choose a …

Dev-st.readthedocs.io

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stlearn.spatial.trajectory.pseudotime — stLearn 0.3.1 documentation

Method – method to adjust the data. use_sme – Use adjusted feature by SME normalization or not copy – Return a copy instead of writing to adata. Returns Return type Anndata

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stlearn.pl.trajectory.tree_plot — stLearn 0.3.1 documentation

Stlearn.pl.trajectory.tree_plot. Hierarchical tree plot represent for the global spatial trajectory inference. adata – Annotated data matrix. library_id – Library id stored in AnnData. …

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srlearn — srlearn 0.5.5 documentation

This package. User guide¶ Guide to instantiate, parametrize, and invoke the core methods using a built-in data set. API documentation¶

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GitHub: Let’s build from here · GitHub

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Citing tslearn — tslearn 0.6.3 documentation - Read the Docs

Citing tslearn — tslearn 0.6.3 documentation Citing tslearn ¶ If you use tslearn in a scientific publication, we would appreciate citations: Bibtex entry:

Tslearn.readthedocs.io

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Read the Docs: documentation simplified

Read the Docs simplifies software documentation by building, versioning, and hosting of your docs, automatically. Treating documentation like code keeps your team in the same …

Docs.readthedocs.io

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Read the Docs tutorial — Read the Docs user documentation

Read the Docs tutorial. In this tutorial you will create a documentation project on Read the Docs by importing a Sphinx project from a GitHub repository, tailor its configuration, and …

Docs.readthedocs.io

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stlearn.ReadOldST — stLearn 0.3.1 documentation

Stlearn.ReadOldST stlearn.ReadOldST(count_matrix_file: Union[str, pathlib.Path] = None, spatial_file: Union[str, pathlib.Path] = None, image_file: Union[str, pathlib.Path] = None, …

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