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OmicsDI Blog
OmicsDI has implemented a unique and novel Search Engine for omics datasets including public and protected data. The OmicsDI Search Box Figure 1: OmicsDI Search Box The OmicsDI Search Box is the main component to searching in OmicsDI. The user can type a set of keywords that will enable the system to find the datasets containing those keywords. …
Blog.omicsdi.orgDA: 16 PA: 16 MOZ Rank: 17
OmicsDI · GitHub
OmicsDI Overview Repositories Projects Packages People Pinned specifications Public. Description about the resource, file formats, etc 8 5 ddi-web-app Public. Data Discovery Index Web Application TypeScript 10 13 ddiR Public. An R …
Github.comDA: 10 PA: 8 MOZ Rank: 19
OmicsDI/ddiR: An R package to access to Omics Discovery Index …
DdiR. An R package to obtain data from the Omics Discovery Index (OmicsDI.It uses its RESTful Web Services at OmicsDI WS for that purpose.. Currently, the following domain entities are supported: Dataset as S4 objects, including methods to get them from OmicsDI by accession and as.data.frame; Publication as S4 objects, including methods to get them from OmicsDI by …
Github.comDA: 10 PA: 13 MOZ Rank: 25
Omics Discovery Index - Metabolomics Info
The Omics Discovery Index (OmicsDI) provides a knowledge discovery framework across heterogeneous omics data (genomics, proteomics, transcriptomics and metabolomics). Most data in the Datatsets Discovery Index can be accessed programmatically using a RESTful API. The API implementation is based on the Spring Rest Framework.
Metabolomics.infoDA: 17 PA: 23 MOZ Rank: 43
specifications/OmicsDISchema.xsd at master · OmicsDI ... - GitHub
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Github.comDA: 10 PA: 50 MOZ Rank: 79
GitHub - OmicsDI/ddipy: OmicsDI Rest API client in Python
When ddipy is installed correctly it should be available on your path through the command omicsdi. This command line interface makes it possible to list all the data links and download the data itself related to an accession number. The tool has one mandatory parameter 'accession number' and several options:
Github.comDA: 10 PA: 14 MOZ Rank: 29
GitHub - OmicsDI/xml-validator
The xml validator provide a way of validating the XML files. The current library and corresponding commandline tool provides different options for checking the quality of the files and the metadata they provide. The library is based on the rules and specifications for the OmicsDI project. The schema validation will provide a first validation of ...
Github.comDA: 10 PA: 22 MOZ Rank: 38
ddipy · PyPI
When ddipy is installed correctly it should be available on your path through the command omicsdi. This command line interface makes it possible to list all the data links and download the data itself related to an accession number. The tool has one mandatory parameter 'accession number' and several options: omicsdi_fetcher [OPTIONS] ACC_NUMBER
Pypi.orgDA: 8 PA: 15 MOZ Rank: 30
OmicsDI XML format | BiŌkeanós
The Omics Discovery Index (OmicsDI) provides dataset discovery across a heterogeneous, distributed group of Transcriptomics, Genomics, Proteomics and Metabolomics data resources, including both open a ... PRIDE XML Format. XML submission format for the PRIDE repository at the EBI. ENA Sequence XML Schema. ENA Sequence XML Schema is a standardised XML …
Biokeanos.comDA: 13 PA: 30 MOZ Rank: 51
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