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GitHub - imagej/imagej2: Open scientific N-dimensional …
ImageJ2 has an N-dimensional data model driven by the powerful ImgLib2 library, which supports image data expressed in an extensible set of numeric and non-numeric types, and accessed from an extensible set of data sources. ImageJ2 is driven by a collaborative development process; for details, see the Contributing page.
Github.comDA: 10 PA: 15 MOZ Rank: 25
GitHub - imagej/imagej-mesh-io: I/O plugins for ImageJ …
I/O plugins for ImageJ meshes and related data structures - GitHub - imagej/imagej-mesh-io: I/O plugins for ImageJ meshes and related data structures
Github.comDA: 10 PA: 22 MOZ Rank: 33
imagej/imagej.github.io - Gitter
I just pushed some updates to the continuous integration documentation to reflect the migration to Github Actions. I left the Travis page there with a notice at the opt and just added a new Github Actions page and tried to locate and update links and point them to the new Github Actions page. I hope everything is correct. I don't think I broke ...
Gitter.imDA: 9 PA: 24 MOZ Rank: 35
ImageJ basics - GitHub Pages
ImageJ macros can automate the click through. Let’s make a macro to count the stars: File > Open. Open the original image. Open the Macro recorder. Edit the name of the macro, ex. "CountStars.ijm" (Note- .ijm is the ImageJ Macro extension). Click through all the steps for threshold counting. The steps will be recorded. Image > Type > 8 bit
Leighhenderson.github.ioDA: 24 PA: 15 MOZ Rank: 42
Source code - ImageJ
Clone the source repository of interest. Type mvn from the top-level directory. Advanced instructions for building, or modifying, the source code are available for specific development environments: Note that these tutorials are targeted towards ImageJ, but would apply to any Maven-based project.
Imagej.github.ioDA: 16 PA: 31 MOZ Rank: 51
ImageJ: Pixel size & dimensions - GitHub Pages
Pixel sizes & measurements¶. As described before, the pixel size influences measurements in ImageJ – but the units don’t appear anywhere in the Results table.Furthermore, once a measurement is added to the Results table it is fixed: it won’t automatically update if the pixel sizes are changed later.. For that reason, you need to be careful to check pixel sizes before …
Bioimagebook.github.ioDA: 22 PA: 45 MOZ Rank: 72
ImageJ2 - ImageJ
ImageJ2 is a new version of ImageJ for the next generation of multidimensional image data, with a focus on scientific imaging. Its central goal is to broaden the paradigm of ImageJ beyond the limitations of ImageJ 1.x, to support the next generation of multidimensional scientific imaging. To ensure backwards compatibility, ImageJ2 has been ...
Imagej.github.ioDA: 16 PA: 27 MOZ Rank: 49
ImageJ: Morphological operations - Introduction to Bioimage …
ImageJ doesn’t contain an implementation of morphological reconstruction, and therefore doesn’t support all the extra operations that derive from it. However, there’s an extremely library called MorphoLibJ that can be added to ImageJ or Fiji, which …
Bioimagebook.github.ioDA: 22 PA: 42 MOZ Rank: 71
TrakEM2 - ImageJ
1 Features; 2 TrakEM2 in Fiji; 3 Documentation; 4 Running fiji for heavy-duty, memory-intensive, high-performance TrakEM2 tasks; 5 Preparing TrakEM2 for best performance. 5.1 For fastest browsing through layers; 5.2 For importing large collections of images and editing them immediately afterwards; 5.3 For regenerating mipmaps the fastest possible; 5.4 Faster XML …
Imagej.github.ioDA: 16 PA: 27 MOZ Rank: 51
ImageJ.JS
ImageJ is an open source image processing program designed for scientific multidimensional images.
Ij.imjoy.ioDA: 11 PA: 11 MOZ Rank: 21
ImageJ Plugin - DeepLIIF
Open an image file in ImageJ. Create the desired regions of interest and add them to ImageJ's ROI Manager. (Note: DeepLIIF currently has a limit on ROI dimensions of 3000 x 3000 pixels.) Navigate to the Plugins > DeepLIIF > Submit ROIs to DeepLIIF menu item. Choose the resolution/magnification of your image (10x, 20x, or 40x) and click OK.
Nadeemlab.github.ioDA: 19 PA: 17 MOZ Rank: 46
github.com
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Un
Github.comDA: 10 PA: 50 MOZ Rank: 77
deepImageJ • Tutorial - GitHub Pages
Apply your trained model in Imagej/Fiji. Once you have trained a model, you can convert the model with YAPiC to use it with the DeepImageJ plugin of ImageJ/Fiji. For deployment to DeepimageJ you have to use Tensorflow version 1.13.1 (see installation instructions below) Get hands on YAPiC with the tutorial.
Deepimagej.github.ioDA: 20 PA: 26 MOZ Rank: 58
imagej/imagej.github.io - Gitter
@frauzufall: I can't help with this decision. I also don't care much about the work I put in the shirt designs, I was just playing around.
Gitter.imDA: 9 PA: 24 MOZ Rank: 46
Dirk's Home Page - Running ImageJ on the HPCC - GitHub Pages
Step 2: Install ImageJ. For this step I recommend installing Fiji (Fiji is just ImageJ) which a little easier to use than ImageJ proper. For one thing it makes installing a few plug-ins much easier. Download the 64-bit installer into your home directory on the HPCC. Go to the Fiji website to get a URL link to the latest version.
Colbrydi.github.ioDA: 18 PA: 32 MOZ Rank: 64
deepImageJ • Download - GitHub Pages
Download the dependencies and the plugin given in the following links. Place DeepImageJ_X.X.X.jar inside the 'plugins' folder of the 'ImageJ2/Fiji' directory. Unzip the dependencies_xxx.zip file and copy all the .jar files in the 'jars' folder inside the 'ImageJ2/Fiji' directory. If we already have other versions of the dependencies inside the ...
Deepimagej.github.ioDA: 20 PA: 25 MOZ Rank: 60
Imagej macros and scripts | imagej_macros_and_scripts
The tools converts images in the .nd format to ImageJ hyperstacks. The user selects an .nd file. An image can consist of multiple positions, frames, z-slices and channels. Each position is converted into an ImageJ hyperstack and written into a subfolder of the folder containing the input image. NDPI export regions
Montpellierressourcesimagerie.github.ioDA: 39 PA: 27 MOZ Rank: 82
· imagej-macros - GitHub Pages
To start FIJI on the computing room computers, click on the Fiji folder on the Desktop, then select Fiji.app and click on ImageJ-win64.exe. The core functionality in ImageJ is accessible via the menu bar shown below. indicates selecting first the “File” menu and then the “Open” Sub-menu/command.
Biomedicalhub.github.ioDA: 23 PA: 30 MOZ Rank: 70
#168 (Merge imageja into imagejdev's git repository) – ImageJ
The ImageJ project now uses GitHub Issues for issue tracking. Please file all new issues there. Ticket #168 (closed task: fixed) Opened 2010-08-24T14:23:37-05:00. Last modified 2010-08-31T12:05:23-05:00. Merge imageja into imagejdev's git …
Imagej.github.ioDA: 16 PA: 17 MOZ Rank: 51
ImageJ pvAccess Viewer (EPICS_NTNDA_Viewer.java)
The ImageJ viewer is running on a Windows machine and is decompressing the arrays and displaying them at the full 95 frames/s rate. The Windows Task Manager Network Monitor shows that the actual network utilization is only 6.5 Mb/s, compared to over 760 Mb/s if we were transmitting uncompressed arrays. The Windows machine has 8 cores, and ImageJ is using …
Areadetector.github.ioDA: 22 PA: 48 MOZ Rank: 89
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