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Location | Ashburn United States |
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Metro Code | 511 |
Timezone | America/New_York |
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Websites Listing
We found Websites Listing below when search with hakyimlab.org on Search Engine
Home | HakyImLab Projects
Haky's daily log and other musings, built with Hugo and blogdown with the hugo-prose theme.
Brainxcan.hakyimlab.orgDA: 23 PA: 23 MOZ Rank: 24
hakyimlab · GitHub
Hakyimlab Overview Repositories Projects Packages People Popular repositories MetaXcan Public. MetaXcan software and manuscript Python 86 69 PrediXcan Public. Forked from hakyim/PrediXcan. PrediXcan Project Python 83 50 ukbrest Public ...
Github.comDA: 10 PA: 10 MOZ Rank: 21
How to annotate a gene with the cytogenetic band | ImLab Notes
Adding the cytogenetic to genes is convenient because it provides a somewhat memorable names for the genomic region where the gene is located. Biomart package in bioconductor has the database and function for the annnotation. suppressMessages(library(tidyverse)) suppressMessages(library(glue)) suppressMessages(library(RSQLite)) add cytogenetic band to …
Lab-notes.hakyimlab.orgDA: 23 PA: 50 MOZ Rank: 84
hakyimlab · GitHub
hakyimlab has 62 repositories available. Follow their code on GitHub.
Github.comDA: 10 PA: 28 MOZ Rank: 41
Im Lab
Click on Image to go HakyImLab.org . Proudly powered by WordPress | Theme: Big Brother by WordPress.com. ...
Imlab.uchicago.eduDA: 18 PA: 18 MOZ Rank: 23
How can I build my own prediction model? | PredictDB
If you find any mistakes (including typos) or want to suggest changes, please feel free to edit the source file of this page on Github and create a pull request.
Predictdb.orgDA: 13 PA: 50 MOZ Rank: 75
How do I query the prediction model db? | PredictDB
If you find any mistakes (including typos) or want to suggest changes, please feel free to edit the source file of this page on Github and create a pull request.
Predictdb.orgDA: 13 PA: 50 MOZ Rank: 75
MetaXcan is a set of tools to integrate genomic information of ...
MetaXcan. MetaXcan is a set of tools to integrate genomic information of biological mechanisms with complex traits. Almost all of the software here is command-line based. This software has been recently migrated to python 3 as python 2 has been sunset.
Curatedpython.comDA: 17 PA: 44 MOZ Rank: 68
Command Line Reference - hakyimlab/MetaXcan Wiki
Command Line Tools. This repository contains several scripts for running MetaXcan's computations, and building support data. Most scripts are meant to be run from the command line, and expect command line arguments to control them. MetaXcan supports a wild and vast of input data.
Github-wiki-see.pageDA: 20 PA: 49 MOZ Rank: 77
hakyimlab/gtex-gwas-analysis: zenodo-release.v1.0 | Zenodo
No description provided.
Zenodo.orgDA: 10 PA: 15 MOZ Rank: 34
ukbREST: efficient and streamlined data access for reproducible ...
1 Introduction. Large-scale biobanks provide invaluable resources to the scientific community to investigate the causes of disease (Gaziano et al., 2016; Kvale et al., 2015; Sudlow et al., 2015).UK Biobank, the most mature of them, is a prospective study of the health of individuals based in the UK (Bycroft et al., 2018).It has collected and continues to collect extensive genetic ...
Academic.oup.comDA: 16 PA: 42 MOZ Rank: 68
Hae Kyung Im | College Center for Research and ... - University of …
P.I. willing to mentor undergraduate research volunteers, work study students and students requiring pay interested in Genomic Data Science.
Ccrf.uchicago.eduDA: 17 PA: 21 MOZ Rank: 49
联合使用PrediXcan、MetaXcan基于GWAS结果预测靶基因及特异 …
以下是全转录组分析的流程. 4、协调GWAS文件的坐标(hg19坐标统一为hg38) 原始GWAS结果文件cad.add.160614.website.txt.gz的格式如下所示:. 我们可以看到,这个文件的坐标是hg19版本的,但MetaXcan的最新版是hg38,因此我们需要先将GWAS结果文件cad.add.160614.website.txt.gz的坐标转为hg38。
Codeprj.comDA: 15 PA: 18 MOZ Rank: 45
Re: [hakyimlab/summary-gwas-imputation] liftover from hg19 -> …
All groups and messages ... ...
Groups.google.comDA: 17 PA: 34 MOZ Rank: 64
git clone 命令 | 菜鸟教程
Git clone 命令. Git 基本操作. git clone 拷贝一个 Git 仓库到本地,让自己能够查看该项目,或者进行修改。. 拷贝项目命令格式如下:. git clone [url] [url] 是你要拷贝的项目。. 例如我们拷贝 Github 上的项目:. $ git clone https: // github.com / tianqixin / runoob-git-test. Cloning into ...
Runoob.comDA: 14 PA: 19 MOZ Rank: 47
GWAS and GTEx QTL integration | Zenodo
All versions This version; Views : 3,893: 3,892: Downloads : 9,166: 9,166: Data volume : 18.0 TB: 18.0 TB: Unique views : 3,378: 3,377: Unique downloads : 3,497: 3,497
Zenodo.orgDA: 10 PA: 15 MOZ Rank: 40
FAQ - hakyimlab/MetaXcan Wiki
FAQ - hakyimlab/MetaXcan Wiki. Transcriptome Model general topics. Transcriptome models (a.k.a as 'weight DB files', or 'prediction models') play a key role in MetaXcan's calculations. The summary-based methods such as S-PrediXcan and S-MulTiXcan also depend on pre-computed panels of LD reference (a.k.a. 'covariance matrices'). We have released matching pairs of prediction models and LD ...
Github-wiki-see.pageDA: 20 PA: 30 MOZ Rank: 66
MetaXcan · csd3
MetaXcan Web: https://github.com/hakyimlab/MetaXcan Installation and a test run, git clone https://github.com/hakyimlab/MetaXcan cd MetaXcan/softwa...
Cambridge-ceu.github.ioDA: 23 PA: 32 MOZ Rank: 72
CommonMind consortium - Brain Dorsolateral Prefrontal Cortex
. Single-tissue expression prediction models with LD reference data are available in this GitHub repository. The underlying algorithm is Elastic Net. These models were presented in “Gene expression imputation across multiple brain regions provides insights into schizophrenia risk, Huckins et al, 2019, Nature Genetics.
Predictdb.orgDA: 13 PA: 50 MOZ Rank: 32
使用PrediXcan、MetaXcan基于GWAS结果预测靶基因及特异性组 …
PrediXcan , SPrediXcan,MetaXcan是近些年基于GWAS后续分析开发出来的工具。. 主要功能是在组织和表达的层面预测影响表型的基因,弥补了GWAS只能在基因组层面解释表型的不足。. 下面是这几个工具的工作流程:. 今天给大家介绍一下如何使用SPrediXcan和MetaXcan工具进行 ...
Zhuanlan.zhihu.comDA: 18 PA: 12 MOZ Rank: 49
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