Gehlenborglab.org

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Gehlenborg lab


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AVIVATOR

AVIVATOR. Something has gone wrong loading your image. Please refer to the docs for information about supported file formats. You are seeing a random demo image because no image URL was provided. To view your own images, enter a URL into the "OME-TIFF/Bioformats-Zarr URL" field. See the docs for details on how to prepare your images for viewing ...

Avivator.gehlenborglab.org

DA: 26 PA: 26 MOZ Rank: 27

gehlenborglab · GitHub Topics · GitHub

GitHub is where people build software. More than 65 million people use GitHub to discover, fork, and contribute to over 200 million projects.

Github.com

DA: 10 PA: 21 MOZ Rank: 32

UpSetR: an R package for the visualization of intersecting sets and ...

Motivation: Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed. Results: We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, …

Pubmed.ncbi.nlm.nih.gov

DA: 23 PA: 10 MOZ Rank: 35

统计多个基因列表交集并画韦恩图和Upset图 - 简书

有时候,我们从GEO数据库挖掘了好几组数据集的差异表达基因,我们需要统计这些基因列表的交集,一般可以用韦恩图和Upset图。. 而韦恩图一般适合小样本的交集,而多个样本的话可以用Upset图来表示。. 比如,我们通过GEO2R工具,获得了差异基因列表的结果 ...

Jianshu.com

DA: 15 PA: 15 MOZ Rank: 33

UpSetR: an R package for the visualization of intersecting sets and ...

A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/. Supplementary information. Supplementary data are available at Bioinformatics online. 1 Introduction. The visualization of sets and their intersections is a common challenge for researchers who are dealing with biological and biomedical data. For example, a researcher …

Ncbi.nlm.nih.gov

DA: 20 PA: 25 MOZ Rank: 49

Nils Gehlenborg presentations | SlideShare

View all of Nils Gehlenborg's Presentations.

Slideshare.net

DA: 18 PA: 13 MOZ Rank: 36

Nils Gehlenborg's research works | Harvard Medical School, MA …

Nils Gehlenborg's 172 research works with 60,329 citations and 42,793 reads, including: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Researchgate.net

DA: 20 PA: 50 MOZ Rank: 76

ngehlenborg’s gists · GitHub

GitHub Gist: star and fork ngehlenborg's gists by creating an account on GitHub.

Gist.github.com

DA: 15 PA: 12 MOZ Rank: 34

Viv: multiscale visualization of high-resolution multiplexed

Viv functions more similarly to popular desktop bioimaging applications than to corresponding web alternatives (Supplementary Note 1). Most web viewers require the pre-translation of large binary ...

Nature.com

DA: 14 PA: 28 MOZ Rank: 50

UpSetR: an R package for the visualization of intersecting sets and ...

Motivation Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed. Results We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show …

Typeset.io

DA: 10 PA: 50 MOZ Rank: 95

UpSetR: an R package for the visualization of intersecting sets and ...

A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed. Results: We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties. Availability and implementation: UpSetR is available at ...

Dash.harvard.edu

DA: 16 PA: 18 MOZ Rank: 44

Postdoctoral Fellow - Genomics and Imaging Data Visualization …

Description. We are hiring multiple postdoctoral fellows to develop novel visualization methods and tools for data generated by the NIH 4D Nucleome Consortium.

Careers.iscb.org

DA: 16 PA: 15 MOZ Rank: 42

Okan Bulut - ualberta.ca

Functionality • Make sure that missing values are NOT labeled this time (i.e., replace 999 with null) • Create a new pivot table for each item (this time missing is NOT included) and calculate percentages based on counts. • Insert a bar graph to examine the percentages for each response option for a given item.

Ualberta.ca

DA: 15 PA: 50 MOZ Rank: 38

UpSetR: an R package for the visualization of intersecting

A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/. Supplementary information. Supplementary data are available at Bioinformatics online. Go to: 1 Introduction. The visualization of sets and their intersections is a common challenge for researchers who are dealing with biological and biomedical data. For example, a researcher …

Europepmc.org

DA: 13 PA: 20 MOZ Rank: 46

Halyos: A patient-facing visual EHR interface for ... - bioRxiv

New Results Halyos: A patient-facing visual EHR interface for longitudinal risk awareness

Biorxiv.org

DA: 15 PA: 25 MOZ Rank: 54

how to easily make complex Euler/Venn diagrams in R?

From my microarray data I have selected three subsets of probes. I would like to display these subsets as a Euler diagram to visualize the overlaps, but am struggling with inputting the combinations into Eulerr. All three subsets need to be nested within the full set of probes; one subset is fully contained within another, and the third overlaps with the other two.

Echemi.com

DA: 14 PA: 50 MOZ Rank: 35

UpSetR vs complex-upset - compare differences and reviews?

When comparing UpSetR and complex-upset you can also consider the following projects: patchwork - The Composer of ggplots. ggvenn - Venn Diagram by ggplot2, with really easy-to-use API. ggCyberPunk - A "Geom" for creating charts with a cyberpunk aesthetic. ggsignif - Easily add significance brackets to your ggplots.

Libhunt.com

DA: 15 PA: 32 MOZ Rank: 63

Visualization of 3D Genome Data - slideshare.net

Weight for each interaction 3. Constraint: nodes in sequence order. 27. Genome Interaction Data Visualization Scale 1. Global Interactions (whole chromosome or genome) 2. Local Interactions (immediate feature neighborhood) 3. Individual Features Encoding 1. Heatmap 2. Node-Link Diagram (here: Arc Diagram) 3. 3D.

Slideshare.net

DA: 18 PA: 44 MOZ Rank: 79

Mapping the host protein interactome of non-coding

Abstract. A deep understanding of SARS-CoV-2-host interactions is crucial to the development of effective therapeutics. The role of non-coding regions of …

Researchgate.net

DA: 20 PA: 50 MOZ Rank: 32

Ilan Gold - Software Engineer - Harvard Medical School - LinkedIn

Harvard Medical School. Aug 2019 - Present2 years 4 months. Greater Boston Area. - Original author of both Viv and AVIVATOR, web-based tools for high bit …

Linkedin.com

DA: 16 PA: 23 MOZ Rank: 58

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