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Domain Informations
Network
- inetnum : 128.95.0.0 - 128.95.255.255
- name : WASHINGTON
- handle : NET-128-95-0-0-1
- status : Direct Allocation
- created : 2020-05-20
- changed : 2020-05-20
Owner
- organization : University of Washington
- handle : UWND-Z
- address : Array,Seattle,WA,98105,US
Technical support
- handle : OWU2-ARIN
- name : University, Of Washington
- phone : +1-206-221-6000
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Host Informations
Host name | glide.bakerlab.org |
IP address | 128.95.160.139 |
Location | Seattle United States |
Latitude | 47.6859 |
Longitude | -122.2994 |
Metro Code | 819 |
Timezone | America/Los_Angeles |
Postal | 98115 |
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We found Websites Listing below when search with dimaiolab.ipd.uw.edu on Search Engine
DiMaio Lab | University of Washington
DiMaio Lab | University of Washington DiMaio Lab Research Areas Protein structure determination from low-resolution experimental data Determining a protein’s three dimensional structure — the position of each of its tens of thousands of atoms — is …
Dimaiolab.ipd.uw.eduDA: 20 PA: 20 MOZ Rank: 21
University of Washington - Institute for Protein Design
The goal of the Institute for Protein Design is to create a new world of synthetic proteins to address these challenges. To achieve this, we are marshaling deep institutional strengths in our faculty, staff, postdoctoral scholars, and graduate students as well as our partners from collaborating institutions, innovator networks, and from the ...
Ipd.uw.eduDA: 14 PA: 14 MOZ Rank: 16
Labs – Institute for Protein Design - ipd.uw.edu
© Institute for Protein Design, University of Washington Twitter; YouTube; Email
Ipd.uw.eduDA: 14 PA: 6 MOZ Rank: 22
Model rebuilding guided by experimental density data | Dimaio …
This will output a partially threaded model in 1iruA_thread.pdb that is correctly numbered for input into RosettaCM. Next, we need to set up symmetric modeling with RosettaCM. As in Scenario 1, we use the make_symmdef_file.pl script in order to generate a symmetry definition file for use in Rosetta. A straightforward way to do so is to use Chimera to dock the …
Uw-ipd.github.ioDA: 16 PA: 42 MOZ Rank: 61
Completing partial models guided by experimental density data
The arguments to this program are as follows:-rs runES.sh - the script that is launched on each core and contains Rosetta flags and inputs-x RosettaES.xml - the XML script describing parameters for conformational sampling (see below)-f t20sA.fasta - the input fasta file (with chainbreaks specified by ‘/’)-p input.pdb - the input pdb file. This needs to match the …
Uw-ipd.github.ioDA: 16 PA: 34 MOZ Rank: 54
Postdoctoral Scholars | UW Biochemistry
Contact Us Front Desk. HSB J-Wing, J405. 206 543-1660. [email protected] Mailing Address. UW Box 357350. 1705 NE Pacific St. Seattle WA 98195-7350
Sites.uw.eduDA: 12 PA: 36 MOZ Rank: 53
denovo modelling on a virus-coat protein dimer | RosettaCommons
Https://dimaiolab.ipd.uw.edu/software/ for information on how to use rosettaCM in this situation, but I would use your phenix model to generate a symmdef file as described (if possible) and then run Either rosettaCM or RosettaES to complete loops. (I would run rosettaCM first, and then rosettaES on the parts you don't like)
Rosettacommons.orgDA: 22 PA: 11 MOZ Rank: 39
De novo structure building with medium resolution map
If that doesn't work, you can email me at [email protected] or Dr. DiMaio and we could discuss this further. Dan Tue, 2019-07-02 11:02
Rosettacommons.orgDA: 22 PA: 11 MOZ Rank: 40
Graduate Students | UW Biochemistry
Contact Us Front Desk. HSB J-Wing, J405. 206 543-1660. [email protected] Mailing Address. UW Box 357350. 1705 NE Pacific St. Seattle WA 98195-7350
Sites.uw.eduDA: 12 PA: 32 MOZ Rank: 52
B1_SampleSegment1.sh from RosettaES tutorial crashes
B1_SampleSegment1.sh from RosettaES tutorial crashes. I am new to Rosetta and tried to follow the RosettaES tutorial, as well as applying it to my own case. I downloaded and installed the latest weekly release (Rosetta 2017.18) for both Linux (Scientific Linux v6.9) and MacOS X (10.11.5). Running the A_PickFragments.sh script worked ok.
Rosettacommons.orgDA: 22 PA: 10 MOZ Rank: 41
Macromolecular modeling and design in Rosetta: new methods …
1 Supplementary information for: Macromolecular modeling and design in Rosetta: new methods and frameworks Rosetta is licensed and distributed through www.rosettacommons.org. Licenses for academic, non-profit and government laboratories are free of
Preprints.orgDA: 17 PA: 49 MOZ Rank: 76
SUPPORTING INFORMATION - zhanggroup.org
SUPPORTING INFORMATION Table of Contents Supporting Texts • Supplementary Text 1.Dataset of CR-I-TASSER training and benchmarking. • Supplementary Text 2.Procedure for determining C correspondences.
Zhanggroup.orgDA: 14 PA: 26 MOZ Rank: 51
Carson Adams - Graduate Student - University of Washington
Carson Adams DiMaio Lab Graduate Student at University of Washington, Department of Biochemistry Seattle, Washington, United States 16 connections
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The structure of an Hsp90-immunophilin complex reveals
Hsp90 conformations were additionally characterized by size-exclusion chromatography coupled to multiangle light scattering (SEC-MALS) (Figure 1B).Apo Hsp90 elutes at ∼8.8 mL (black) with an average molecular weight (MW avg) of 174 kDa, indicating a dimer species, based on its calculated MW (MW calc) of 169 kDa.Following incubation with …
Sciencedirect.comDA: 21 PA: 38 MOZ Rank: 72
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