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We found Websites Listing below when search with cnvkit.readthedocs.io on Search Engine
Tumor heterogeneity — CNVkit 0.9.9.dev0 documentation
CNVkit provides wrappers for exporting .cns segments to THetA2’s input format and importing THetA2’s result file as CNVkit’s segmented .cns files. See the commands theta and import-theta for usage instructions. After running the CNVkit Copy number calling pipeline on a sample, and calling SNVs jointly on the tumor and normal samples, generate the THetA2 input files from …
Cnvkit.readthedocs.ioDA: 21 PA: 29 MOZ Rank: 50
CNVKit — Janis documentation
Install Janis. Ensure Janis is configured to work with Docker or Singularity. Ensure all reference files are available: Note. More information about these inputs are available below. Generate user input files for CNVKit: # user inputs janis inputs CNVKit > …
Janis.readthedocs.ioDA: 20 PA: 48 MOZ Rank: 69
CNVkit — RCAC Biocontainers v1.0 documentation
RCAC Biocontainers latest Frequently Asked Questions. Frequently Asked Questions
Biocontainer-doc.readthedocs.ioDA: 31 PA: 36 MOZ Rank: 69
cnvlib.diagram — CNVkit 0.9.9 documentation
It depends on ReportLab, too, so we isolate this functionality here so that the rest of CNVkit will run without it. (And also to keep the codebase tidy.) """ import collections import math import warnings from Bio.Graphics import BasicChromosome as BC from reportlab.graphics import renderPDF from reportlab.lib import colors from reportlab.lib.units import inch from …
Cnvkit.readthedocs.ioDA: 21 PA: 39 MOZ Rank: 63
GitHub - etal/cnvkit: Copy number variant detection …
CNVkit. A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from high-throughput sequencing.
Github.comDA: 10 PA: 12 MOZ Rank: 26
Structural and Copy Number variants - BALSAMIC documentation
The merged *.svdb.vcf.gz file retains all the information for the variants from the caller in which the variants are identified, which are then annotated using ensembl-vep. The following command can be used to fetch the variants identified by a specific caller from merged structural and copy number variants. zgrep -E "#|<Caller>" <*.svdb.vcf.gz>.
Balsamic.readthedocs.ioDA: 23 PA: 31 MOZ Rank: 59
GitHub - jlchen5/CNVkit: Copy number variant detection from …
CNVkit. A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from high-throughput sequencing.
Github.comDA: 10 PA: 15 MOZ Rank: 31
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