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BioCyc Pathway/Genome Database Collection
20,005 Pathway/Genome Databases to Search. BioCyc is a collection of 20,005 Pathway/Genome Databases (PGDBs) for model eukaryotes and for thousands of microbes, plus software tools for exploring them. BioCyc is an encyclopedic reference that contains curated data from 130,000 publications.. The EcoCyc and MetaCyc databases are freely available, but …
Biocyc.orgDA: 14 PA: 14 MOZ Rank: 15
Summary of Escherichia coli 536, version 26.0 - biocyc.org
Summary of Escherichia coli, Strain 536, version 26.0 Tier 3 Uncurated Database Summary: This Pathway/Genome Database (PGDB) was generated on 15-Feb-2020 from the annotated genome of Escherichia coli 536, as obtained from RefSeq (annotation date: 30-JAN-2019). The PGDB was created computationally by the PathoLogic component of the Pathway Tools …
Biocyc.orgDA: 10 PA: 17 MOZ Rank: 28
BioCyc Web Services
BioCyc Web Services BioCyc offers several classes of REST-based web services that are summarized in the table below.These services include: Data retrieval services that return data in XML, JSON, and/or column-delimited formats (BioCyc data can also be downloaded in a variety of XML and non-XML formats) . Visualization services, e.g., to map gene expression data onto …
Biocyc-staging.orgDA: 18 PA: 19 MOZ Rank: 39
BioCyc Guided Tour
BioCyc Guided Tour. This page provides a tour of the information pages available through the EcoCyc/BioCyc website. A convenient way to take the guided tour is to keep this page visible in one tab in your Web browser, while viewing the other pages listed in a separate browser tab. EcoCyc gene/protein page for tyrB / tyrosine aminotransferase.
Biocyc-staging.orgDA: 18 PA: 14 MOZ Rank: 35
Phoenix Bioinformatics
The BioCyc web portal from SRI International contains genome and metabolic-pathway information for 17,832 databases including 60 curated databases. BioCyc encyclopedias are unique in integrating a diverse range of data and providing a high level of curation for important microbes. BioCyc Pathway/Genome Databases (PGDBs) are organized into tiers ...
Phoenixbioinformatics.orgDA: 29 PA: 7 MOZ Rank: 40
BioCyc Update History
Release Notes for BioCyc Version 23.1. Released on September 19, 2019. Version 23.1 is a minor release that includes updates to some of the databases at the BioCyc Web site and the corresponding downloadable data files.. Version 23.1 of BioCyc contains 14735 Pathway/Genome Databases.
Biocyc-staging.orgDA: 22 PA: 20 MOZ Rank: 47
BioCyc Database Collection - SRI International
The BioCyc database collection is a set of more than 9,300 Pathway/Genome Databases (PGDBs) describing many sequenced genomes. The comprehensive website enables researchers around the world share fundamental information about biochemical pathways and genomes. PGDBs describe the entire genome of an organism, as well as its biochemical …
Sri.comDA: 11 PA: 21 MOZ Rank: 38
Guide to the BioCyc Database Collection
BioCyc computes orthologous genes (e.g., that G 1 and G 1 ′ are orthologs) as bidirectional best hits obtained from BLAST outputs among most (but not yet all) pairs of genomes within BioCyc. To determine whether yqeB and xdhA are functionally linked, we examine the orthologs of those two genes across a special set of 1800 BioCyc genomes that we call the reference genomes. …
Biocyc-staging.orgDA: 18 PA: 22 MOZ Rank: 47
The BioCyc collection of microbial genomes and metabolic pathways
BioCyc.org is a microbial genome Web portal that combines thousands of genomes with additional information inferred by computer programs, imported from other databases and curated from the biomedical literature by biologist curators. BioCyc also provides an extensive range of query tools, visualizat …
Pubmed.ncbi.nlm.nih.govDA: 23 PA: 10 MOZ Rank: 41
Webinars: Get more out of BioCyc
Webinar #1: Introduction to BioCyc. Make the most of BioCyc! The "Introduction to BioCyc" webinar introduces you to the BioCyc.org site and to the BioCyc collection of thousands of Pathway/Genome Databases. "Introduction to BioCyc" is presented here in six sequential segments, giving you a guided tour of the BioCyc collection in concise bites.
Biocyc-staging.orgDA: 18 PA: 14 MOZ Rank: 41
BioCyc News
BioCyc to Adopt Subscription Model April 11, 2016. BioCyc seeks the support of the scientific community as we begin a new chapter in the development of this bioinformatics resource.. Our goal is to upgrade the curation level and quality of many BioCyc databases to provide scientists with higher quality information resources for many important microbes, and …
Biocyc-staging.orgDA: 18 PA: 28 MOZ Rank: 56
Computational Metabolomics Operations at BioCyc.org
BioCyc provides both interactive and programmatic services to translate sets of metabolites specified in many alternative ways to the BioCyc identifiers for those metabolites and to identifiers for external databases. For example, a user could supply a list of KEGG or PubChem metabolite identifiers, or a list of InChI-1S strings, or a list of chemical names, and obtain the …
Ncbi.nlm.nih.govDA: 20 PA: 25 MOZ Rank: 56
HumanCyc: Encyclopedia of Human Genes and Metabolism
HumanCyc provides an encyclopedic reference on human metabolic pathways, the human genome, and human metabolites. HumanCyc is part of the larger BioCyc collection of thousands of Pathway/Genome Databases for sequenced genomes. Click the "Change Current Database" button above to explore the available databases.
Humancyc.orgDA: 12 PA: 12 MOZ Rank: 25
Guide to MetaCyc
BioCyc Organism-Specific PGDBs Compared to KEGG Species Views of Pathway Maps Forty nine of the BioCyc databases are designated as Tier 1 or Tier 2, meaning that have undergone anywhere from person-months of curation (e.g., the Bacillus subtilis and Saccharomyces cerevisiae databases) to person-years of curation (e.g., for Arabidopsis thaliana ) to person …
Metacyc.orgDA: 11 PA: 23 MOZ Rank: 47
brassinosteroid biosynthesis I | Pathway - PubChem
brassinosteroid biosynthesis I. Brassinosteroids are steroidal hormones that regulate the growth and development of plants. Brassinosteroids are C 27, C 28 and C 29 steroids depending on their C-24 alkyl substituents. More than 50 free, naturally occurring brassinosteroids have been identified in plants, of which brassinolide (BL) is the most ...
Pubchem.ncbi.nlm.nih.govDA: 24 PA: 28 MOZ Rank: 66
biocyc · PyPI
Copy PIP instructions. Latest version. Released: Sep 25, 2015. Python interface to BioCyc REST API with caching mechanism. Project …
Pypi.orgDA: 8 PA: 16 MOZ Rank: 39
methionine degradation | Pathway - PubChem
methionine degradation. General Background In mammals, MET is an essential amino acid, it is not synthesized and must be obtained in the diet. MET is catabolized to HOMO-CYS via S-ADENOSYLMETHIONINE (SAM). SAM is a compound that mediates most biological methylations. About this Pathway Methionine is first metabolized to SAM in a reaction ...
Pubchem.ncbi.nlm.nih.govDA: 24 PA: 41 MOZ Rank: 81
The MetaCyc database of metabolic pathways and enzymes and …
BioCyc and other Pathway Tools based websites previously generated separate information pages for genes and their products. However, we merged these two pages into a single page because it was confusing to users to remember which information was contained in which page, and some users never realized that both types of pages existed. Thus, a single page now …
Academic.oup.comDA: 16 PA: 31 MOZ Rank: 64
BSubCyc | Encyclopedia of Bacillus Subtilis Subtilis Genes and …
BsubCyc is a model-organism database for the bacterium Bacillus subtilis and is based on the updated B. subtilis 168 genome sequence and annotation published by Barbe et al. in 2009. Gene function annotations are being updated when new literature is available. BsubCyc is also part of the larger BioCyc collection of thousands of Pathway/Genome ...
Bsubcyc.orgDA: 11 PA: 11 MOZ Rank: 30
A Comparison of Microbial Genome Web Portals - Frontiers
BioCyc Caspi et al. (2016) and Karp et al. (2017) is a microbial genome web portal that integrates sequenced genomes with curated information from the biological literature, with information imported from other biological DBs, and with computational inferences. BioCyc data include metabolic pathways, regulatory networks, and gene essentiality ...
Frontiersin.orgDA: 19 PA: 39 MOZ Rank: 77
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